Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2627649..2627767 | Replicon | chromosome |
| Accession | NZ_CP016944 | ||
| Organism | Yersinia enterocolitica strain YE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2627651..2627745 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2627649..2627767 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BED35_RS13445 | 2623477..2623929 | + | 453 | WP_005163578.1 | phage tail protein | - |
| BED35_RS13450 | 2623926..2625068 | + | 1143 | WP_020283095.1 | phage late control D family protein | - |
| BED35_RS23105 | 2625161..2625382 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| BED35_RS13455 | 2625467..2626282 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| BED35_RS13460 | 2626523..2627593 | + | 1071 | WP_164971242.1 | tyrosine-type recombinase/integrase | - |
| - | 2627649..2627767 | + | 119 | - | - | Antitoxin |
| - | 2627651..2627745 | - | 95 | - | - | Toxin |
| BED35_RS13465 | 2627920..2628261 | - | 342 | WP_005163587.1 | YebY family protein | - |
| BED35_RS13470 | 2628358..2629242 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| BED35_RS13475 | 2629244..2629630 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| BED35_RS13480 | 2630023..2630532 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| BED35_RS13485 | 2630916..2631149 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| BED35_RS13490 | 2631199..2632155 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2618621..2633327 | 14706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T65586 NZ_CP016944:c2627745-2627651 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT65586 NZ_CP016944:2627649-2627767 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
