Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2555963..2556081 | Replicon | chromosome |
| Accession | NZ_CP016940 | ||
| Organism | Yersinia enterocolitica strain YE5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2555965..2556059 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2555963..2556081 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BED32_RS12585 | 2551791..2552243 | + | 453 | WP_005163578.1 | phage tail protein | - |
| BED32_RS12590 | 2552240..2553382 | + | 1143 | WP_020283095.1 | phage late control D family protein | - |
| BED32_RS22815 | 2553475..2553696 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| BED32_RS12595 | 2553781..2554596 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| BED32_RS12600 | 2554837..2555907 | + | 1071 | WP_164971242.1 | tyrosine-type recombinase/integrase | - |
| - | 2555963..2556081 | + | 119 | - | - | Antitoxin |
| - | 2555965..2556059 | - | 95 | - | - | Toxin |
| BED32_RS12605 | 2556234..2556575 | - | 342 | WP_005163587.1 | YebY family protein | - |
| BED32_RS12610 | 2556672..2557556 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| BED32_RS12615 | 2557558..2557944 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| BED32_RS12620 | 2558337..2558846 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| BED32_RS12625 | 2559230..2559463 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| BED32_RS12630 | 2559513..2560469 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2546935..2559463 | 12528 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T65567 NZ_CP016940:c2556059-2555965 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT65567 NZ_CP016940:2555963-2556081 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
