Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3325614..3325732 | Replicon | chromosome |
| Accession | NZ_CP016937 | ||
| Organism | Yersinia enterocolitica strain YE6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3325616..3325710 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3325614..3325732 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BED33_RS15670 | 3321442..3321894 | + | 453 | WP_005163578.1 | phage tail protein | - |
| BED33_RS15675 | 3321891..3323033 | + | 1143 | WP_020283095.1 | phage late control D family protein | - |
| BED33_RS23625 | 3323126..3323347 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| BED33_RS15680 | 3323432..3324247 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| BED33_RS15685 | 3324488..3325558 | + | 1071 | WP_164971242.1 | tyrosine-type recombinase/integrase | - |
| - | 3325614..3325732 | + | 119 | - | - | Antitoxin |
| - | 3325616..3325710 | - | 95 | - | - | Toxin |
| BED33_RS15690 | 3325885..3326226 | - | 342 | WP_005163587.1 | YebY family protein | - |
| BED33_RS15695 | 3326323..3327207 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| BED33_RS15700 | 3327209..3327595 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| BED33_RS15705 | 3327988..3328497 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| BED33_RS15710 | 3328881..3329114 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| BED33_RS15715 | 3329164..3330120 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3316586..3329114 | 12528 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T65550 NZ_CP016937:c3325710-3325616 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT65550 NZ_CP016937:3325614-3325732 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
