Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2623307..2623425 | Replicon | chromosome |
Accession | NZ_CP016935 | ||
Organism | Yersinia enterocolitica strain YE7 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2623309..2623403 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2623307..2623425 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BED34_RS12975 | 2619135..2619587 | + | 453 | WP_005163578.1 | phage tail protein | - |
BED34_RS12980 | 2619584..2620726 | + | 1143 | WP_020283095.1 | phage late control D family protein | - |
BED34_RS23115 | 2620819..2621040 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
BED34_RS12985 | 2621125..2621940 | - | 816 | WP_005163581.1 | hypothetical protein | - |
BED34_RS12990 | 2622181..2623251 | + | 1071 | WP_164971242.1 | tyrosine-type recombinase/integrase | - |
- | 2623307..2623425 | + | 119 | - | - | Antitoxin |
- | 2623309..2623403 | - | 95 | - | - | Toxin |
BED34_RS12995 | 2623578..2623919 | - | 342 | WP_005163587.1 | YebY family protein | - |
BED34_RS13000 | 2624016..2624900 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
BED34_RS13005 | 2624902..2625288 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
BED34_RS13010 | 2625681..2626190 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
BED34_RS13015 | 2626574..2626807 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
BED34_RS13020 | 2626857..2627813 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2614279..2628985 | 14706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T65527 NZ_CP016935:c2623403-2623309 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT65527 NZ_CP016935:2623307-2623425 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG