Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2623307..2623425 Replicon chromosome
Accession NZ_CP016935
Organism Yersinia enterocolitica strain YE7

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2623309..2623403 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2623307..2623425 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BED34_RS12975 2619135..2619587 + 453 WP_005163578.1 phage tail protein -
BED34_RS12980 2619584..2620726 + 1143 WP_020283095.1 phage late control D family protein -
BED34_RS23115 2620819..2621040 + 222 WP_005163580.1 DNA-binding transcriptional regulator -
BED34_RS12985 2621125..2621940 - 816 WP_005163581.1 hypothetical protein -
BED34_RS12990 2622181..2623251 + 1071 WP_164971242.1 tyrosine-type recombinase/integrase -
- 2623307..2623425 + 119 - - Antitoxin
- 2623309..2623403 - 95 - - Toxin
BED34_RS12995 2623578..2623919 - 342 WP_005163587.1 YebY family protein -
BED34_RS13000 2624016..2624900 - 885 WP_005163602.1 copper homeostasis membrane protein CopD -
BED34_RS13005 2624902..2625288 - 387 WP_005170441.1 CopC domain-containing protein YobA -
BED34_RS13010 2625681..2626190 - 510 WP_013650000.1 non-heme ferritin -
BED34_RS13015 2626574..2626807 + 234 WP_004389928.1 DNA polymerase III subunit theta -
BED34_RS13020 2626857..2627813 - 957 WP_020283091.1 prolyl aminopeptidase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 2614279..2628985 14706


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 95 bp

>T65527 NZ_CP016935:c2623403-2623309 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT

Antitoxin


Download         Length: 119 bp

>AT65527 NZ_CP016935:2623307-2623425 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References