Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2805533..2805651 | Replicon | chromosome |
| Accession | NZ_CP016931 | ||
| Organism | Yersinia enterocolitica strain YE165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2805535..2805629 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2805533..2805651 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB936_RS13325 | 2801361..2801813 | + | 453 | WP_005163578.1 | phage tail protein | - |
| BB936_RS13330 | 2801810..2802952 | + | 1143 | WP_020283095.1 | phage late control D family protein | - |
| BB936_RS23365 | 2803045..2803266 | + | 222 | WP_005163580.1 | DNA-binding transcriptional regulator | - |
| BB936_RS13335 | 2803351..2804166 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| BB936_RS13340 | 2804407..2805477 | + | 1071 | WP_164971242.1 | tyrosine-type recombinase/integrase | - |
| - | 2805533..2805651 | + | 119 | - | - | Antitoxin |
| - | 2805535..2805629 | - | 95 | - | - | Toxin |
| BB936_RS13345 | 2805804..2806145 | - | 342 | WP_005163587.1 | YebY family protein | - |
| BB936_RS13350 | 2806242..2807126 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| BB936_RS13355 | 2807128..2807514 | - | 387 | WP_069018100.1 | CopC domain-containing protein YobA | - |
| BB936_RS13360 | 2807907..2808416 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| BB936_RS13365 | 2808800..2809033 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| BB936_RS13370 | 2809083..2810039 | - | 957 | WP_069018101.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2796505..2809033 | 12528 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T65509 NZ_CP016931:c2805629-2805535 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT65509 NZ_CP016931:2805533-2805651 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
