Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 191807..191889 Replicon chromosome
Accession NZ_CP016928
Organism Dickeya solani RNS 08.23.3.1.A

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 191809..191889 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 191807..191889 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D083_RS00845 187671..188768 - 1098 WP_022633455.1 HDOD domain-containing protein -
D083_RS00850 188759..189874 - 1116 WP_022633456.1 sensor histidine kinase -
D083_RS00855 189867..190991 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
D083_RS00860 191358..191588 + 231 WP_198560147.1 aminopeptidase -
- 191807..191889 + 83 - - Antitoxin
- 191809..191889 - 81 - - Toxin
D083_RS00865 192059..192397 - 339 WP_022633458.1 YebY family protein -
D083_RS00870 192916..193359 + 444 WP_022633459.1 hypothetical protein -
D083_RS00875 193711..193959 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
D083_RS00880 194076..195818 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 185553..193959 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T65484 NZ_CP016928:c191889-191809 [Dickeya solani RNS 08.23.3.1.A]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT65484 NZ_CP016928:191807-191889 [Dickeya solani RNS 08.23.3.1.A]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References