Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4032940..4033085 | Replicon | chromosome |
| Accession | NZ_CP016923 | ||
| Organism | Klebsiella pneumoniae isolate 11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4032976..4033078 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4032940..4033085 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8C11_RS21830 | 4028070..4030130 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A8C11_RS21835 | 4030134..4030793 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| A8C11_RS21840 | 4030872..4031102 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A8C11_RS21845 | 4031215..4031589 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A8C11_RS21850 | 4031593..4032462 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| A8C11_RS21855 | 4032479..4032817 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4032940..4033085 | - | 146 | - | - | Antitoxin |
| - | 4032976..4033078 | + | 103 | - | - | Toxin |
| A8C11_RS32060 | 4033454..4033597 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A8C11_RS21865 | 4033702..4034670 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A8C11_RS21870 | 4034827..4035480 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| A8C11_RS21875 | 4035477..4035668 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A8C11_RS21880 | 4035766..4036005 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A8C11_RS21885 | 4036121..4037554 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T65457 NZ_CP016923:4032976-4033078 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT65457 NZ_CP016923:c4033085-4032940 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
