Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3350094..3350239 | Replicon | chromosome |
| Accession | NZ_CP016814 | ||
| Organism | Klebsiella pneumoniae strain ED23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3350101..3350203 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3350094..3350239 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV49_RS16420 | 3345626..3347059 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BCV49_RS16425 | 3347175..3347414 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BCV49_RS16430 | 3347512..3347703 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BCV49_RS16435 | 3347700..3348353 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BCV49_RS16440 | 3348510..3349478 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BCV49_RS29620 | 3349583..3349726 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3350094..3350239 | + | 146 | - | - | Antitoxin |
| - | 3350101..3350203 | - | 103 | - | - | Toxin |
| BCV49_RS16450 | 3350362..3350700 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BCV49_RS16455 | 3350717..3351586 | - | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| BCV49_RS16460 | 3351590..3351964 | - | 375 | WP_068987078.1 | CopC domain-containing protein YobA | - |
| BCV49_RS16465 | 3352077..3352307 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BCV49_RS16470 | 3352386..3353045 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BCV49_RS16475 | 3353049..3355109 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T65138 NZ_CP016814:c3350203-3350101 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT65138 NZ_CP016814:3350094-3350239 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
