Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2405328..2405473 | Replicon | chromosome |
| Accession | NZ_CP016813 | ||
| Organism | Klebsiella pneumoniae strain ED2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2405364..2405466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2405328..2405473 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV48_RS11385 | 2400458..2402518 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BCV48_RS11390 | 2402522..2403181 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BCV48_RS11395 | 2403260..2403490 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BCV48_RS11400 | 2403603..2403977 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BCV48_RS11405 | 2403981..2404850 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| BCV48_RS11410 | 2404867..2405205 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2405328..2405473 | - | 146 | - | - | Antitoxin |
| - | 2405364..2405466 | + | 103 | - | - | Toxin |
| BCV48_RS28655 | 2405841..2405984 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BCV48_RS11420 | 2406089..2407057 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BCV48_RS11425 | 2407214..2407867 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BCV48_RS11430 | 2407864..2408055 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BCV48_RS11435 | 2408153..2408392 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BCV48_RS11440 | 2408508..2409941 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T65121 NZ_CP016813:2405364-2405466 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT65121 NZ_CP016813:c2405473-2405328 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
