Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 917615..917760 | Replicon | chromosome |
| Accession | NZ_CP016811 | ||
| Organism | Klebsiella pneumoniae strain DHQP1002001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 917651..917753 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 917615..917760 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8C02_RS05985 | 912745..914805 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A8C02_RS05990 | 914809..915468 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| A8C02_RS05995 | 915547..915777 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A8C02_RS06000 | 915890..916264 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A8C02_RS06005 | 916268..917137 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| A8C02_RS06010 | 917154..917492 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 917615..917760 | - | 146 | - | - | Antitoxin |
| - | 917651..917753 | + | 103 | - | - | Toxin |
| A8C02_RS30800 | 918129..918272 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A8C02_RS06020 | 918377..919345 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A8C02_RS06025 | 919502..920155 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| A8C02_RS06030 | 920152..920343 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A8C02_RS06035 | 920441..920680 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A8C02_RS06040 | 920796..922229 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T65099 NZ_CP016811:917651-917753 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT65099 NZ_CP016811:c917760-917615 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
