Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2122440..2122711 | Replicon | chromosome |
| Accession | NZ_CP016755 | ||
| Organism | Escherichia coli strain FORC_044 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2122570..2122673 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2122440..2122711 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC44_RS11250 | 2118996..2119658 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| FORC44_RS11255 | 2119682..2120338 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FORC44_RS11260 | 2120440..2120670 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FORC44_RS11265 | 2120809..2121183 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FORC44_RS11270 | 2121187..2122058 | + | 872 | Protein_2050 | copper homeostasis membrane protein CopD | - |
| FORC44_RS11275 | 2122071..2122412 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2122440..2122711 | - | 272 | - | - | Antitoxin |
| - | 2122570..2122673 | + | 104 | - | - | Toxin |
| FORC44_RS11280 | 2122808..2123464 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| FORC44_RS11285 | 2123465..2123656 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FORC44_RS11290 | 2123761..2123997 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FORC44_RS11295 | 2124115..2125554 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T64996 NZ_CP016755:2122570-2122673 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT64996 NZ_CP016755:c2122711-2122440 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
