Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 1105139..1105770 Replicon chromosome
Accession NZ_CP016616
Organism Microvirga ossetica strain V5/3m

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag BB934_RS05180 Protein ID WP_099508675.1
Coordinates 1105139..1105552 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name VapB1 Uniprot ID -
Locus tag BB934_RS05185 Protein ID WP_099512639.1
Coordinates 1105552..1105770 (-) Length 73 a.a.

Genomic Context

BB934_RS05160BB934_RS05170BB934_RS05175BB934_RS46895BB934_RS05155BB934_RS05165BB934_RS05180BB934_RS05185BB934_RS05190BB934_RS05200
Location: 1101925..1102944 (1020 bp)
Type: Others
Protein ID: WP_099512638.1
Location: 1104118..1104672 (555 bp)
Type: Others
Protein ID: WP_099508673.1
Location: 1104685..1105062 (378 bp)
Type: Others
Protein ID: WP_099508674.1
Location: 1109096..1109470 (375 bp)
Type: Others
Protein ID: WP_157934044.1
Location: 1100430..1101761 (1332 bp)
Type: Others
Protein ID: WP_099508671.1
Location: 1102952..1103899 (948 bp)
Type: Others
Protein ID: WP_099508672.1
Location: 1105139..1105552 (414 bp)
Type: Toxin
Protein ID: WP_099508675.1
Location: 1105552..1105770 (219 bp)
Type: Antitoxin
Protein ID: WP_099512639.1
Location: 1105863..1106165 (303 bp)
Type: Others
Protein ID: WP_099508676.1
Location: 1106532..1107335 (804 bp)
Type: Others
Protein ID: WP_157934043.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BB934_RS051551100430..1101761-1332WP_099508671.1NCS2 family nucleobase:cation symporter-
BB934_RS051601101925..1102944+1020WP_099512638.1enterochelin esterase-
BB934_RS051651102952..1103899-948WP_099508672.1NAD(P)/FAD-dependent oxidoreductase-
BB934_RS051701104118..1104672+555WP_099508673.1hypothetical protein-
BB934_RS051751104685..1105062+378WP_099508674.1HNH endonuclease-
BB934_RS051801105139..1105552-414WP_099508675.1type II toxin-antitoxin system VapC family toxinToxin
BB934_RS051851105552..1105770-219WP_099512639.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
BB934_RS051901105863..1106165-303WP_099508676.1hypothetical protein-
BB934_RS052001106532..1107335-804WP_157934043.1hypothetical protein-
BB934_RS468951109096..1109470+375WP_157934044.1HNH endonuclease-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(6-127)

Antitoxin

SpoVT-AbrB domain

(7-40)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15135.61 Da        Isoelectric Point: 8.0125

>T64862 WP_099508675.1 NZ_CP016616:c1105552-1105139 [Microvirga ossetica]
MAQPHYLLDTNICIYIRRERPQAVLNRFKVLPPGSTAISVITYGELVYGVRKSSDPDKAMMVLEELTELIPVVPMAIDVA
EAYGRIRSDLAARGALIGNNDLWIAAHAVSLKLTLVTNNEKAFQRVSGLTLENWAKG

Download         Length: 414 bp

>T64862 NZ_CP016616:c1105552-1105139 [Microvirga ossetica]
ATGGCCCAGCCCCATTATCTCCTCGACACCAACATCTGCATCTACATTCGCCGGGAGCGTCCACAAGCCGTCCTCAATCG
GTTCAAAGTCCTGCCCCCAGGCTCGACAGCCATTTCCGTCATTACCTACGGCGAGCTGGTCTACGGGGTCCGGAAAAGCT
CCGACCCCGATAAGGCGATGATGGTTCTGGAGGAGCTGACAGAGCTAATCCCCGTCGTCCCGATGGCCATCGATGTGGCC
GAAGCCTATGGACGCATCCGGTCAGACCTCGCCGCTCGCGGCGCCTTGATCGGCAACAACGATCTCTGGATCGCAGCTCA
TGCCGTGAGCCTCAAACTCACGCTGGTGACCAACAACGAGAAAGCGTTCCAGAGGGTCAGCGGCCTCACTCTCGAGAACT
GGGCCAAGGGATAG

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8309.56 Da        Isoelectric Point: 9.3405

>AT64862 WP_099512639.1 NZ_CP016616:c1105770-1105552 [Microvirga ossetica]
MAIAKVFRSGNSQAVRLPKQFRLTRDEVEIFRRGDEIVLREKPKTLARAFELLCNLPDWTQEDAPPQGREGL

Download         Length: 219 bp

>AT64862 NZ_CP016616:c1105770-1105552 [Microvirga ossetica]
ATGGCCATCGCCAAGGTGTTTCGGTCCGGCAACAGTCAGGCCGTCCGGCTGCCCAAGCAGTTTCGCCTTACCCGTGATGA
GGTCGAGATTTTCCGCCGCGGCGATGAAATCGTGCTGCGGGAAAAACCCAAGACGCTGGCGCGGGCGTTCGAGCTGCTGT
GTAACCTCCCTGATTGGACCCAGGAGGATGCCCCGCCACAGGGGCGCGAGGGGCTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References