Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4648671..4648942 | Replicon | chromosome |
| Accession | NZ_CP016546 | ||
| Organism | Escherichia coli strain O177:H21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4648801..4648904 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4648671..4648942 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB405_RS23455 | 4645226..4645888 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BB405_RS23460 | 4645912..4646568 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| BB405_RS23465 | 4646670..4646900 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BB405_RS23470 | 4647039..4647413 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BB405_RS23475 | 4647417..4648289 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| BB405_RS23480 | 4648302..4648643 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4648671..4648942 | - | 272 | - | - | Antitoxin |
| - | 4648801..4648904 | + | 104 | - | - | Toxin |
| BB405_RS23490 | 4649039..4649695 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| BB405_RS23495 | 4649696..4649887 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BB405_RS23500 | 4649992..4650228 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BB405_RS23505 | 4650346..4651785 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T64781 NZ_CP016546:4648801-4648904 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT64781 NZ_CP016546:c4648942-4648671 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
