Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 929559..929827 Replicon chromosome
Accession NZ_CP016497
Organism Escherichia coli strain UPEC 26-1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 929687..929789 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 929559..929827 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BB344_RS04245 926111..926773 - 663 WP_000944256.1 exodeoxyribonuclease X -
BB344_RS04250 926797..927453 - 657 WP_000011644.1 carbon-nitrogen hydrolase family protein -
BB344_RS04255 927556..927786 - 231 WP_000916763.1 DNA polymerase III subunit theta -
BB344_RS04260 927925..928299 + 375 WP_000168747.1 CopC domain-containing protein YobA -
BB344_RS04265 928303..929175 + 873 WP_000879311.1 copper homeostasis membrane protein CopD -
BB344_RS04270 929188..929529 + 342 WP_000984819.1 YebY family protein -
- 929559..929827 - 269 - - Antitoxin
- 929687..929789 + 103 - - Toxin
BB344_RS04280 929924..930580 + 657 WP_000812743.1 protein-serine/threonine phosphatase -
BB344_RS04285 930581..930772 - 192 WP_001317886.1 YebW family protein -
BB344_RS04290 930877..931113 - 237 WP_001295499.1 DUF1480 family protein -
BB344_RS04295 931231..932670 - 1440 WP_001704100.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T64701 NZ_CP016497:929687-929789 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT64701 NZ_CP016497:c929827-929559 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References