Detailed information of TA system TA064658

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1348921..1349492
• Replicon: chromosome
• Accession: NZ_CP016456
• Organism: Sphingobium sp. RAC03

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: BSY17_RS20940
• Protein ID: WP_083217110.1
• Coordinates: 1349115..1349492 (+)
• Length: 126 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: A0A013XX06
• Locus tag: BSY17_RS20935
• Protein ID: WP_043150025.1
• Coordinates: 1348921..1349118 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 126 a.a.
• Molecular weight: 13953.18 Da
• Isoelectric Point: 7.6167

>T64658 WP_083217110.1 NZ_CP016456:1349115-1349492 [Sphingobium sp. RAC03]
MILVDSSVWMDHLRISNPWLAAGLNAGRILGHPFVIGEIALGSLTNRQGVLRMLHKLPEAELAQHREVDALIEQVPLFNR
GIGYVDTHILASVRLTAGSFLWTRDRRLHSIASEMGLAWTPPHPH

Nucleotide

• Length: 378 bp

>T64658 NZ_CP016456:1349115-1349492 [Sphingobium sp. RAC03]
ATGATATTGGTCGATAGTTCGGTCTGGATGGATCATCTACGCATATCAAACCCATGGCTGGCGGCTGGTTTGAACGCTGG
AAGAATATTGGGCCATCCGTTTGTCATCGGCGAGATCGCGCTGGGCAGTCTGACAAACAGGCAGGGTGTGTTGCGTATGT
TGCACAAATTGCCCGAAGCCGAGCTGGCACAACATCGCGAAGTCGATGCCTTGATCGAACAAGTGCCGCTGTTCAACCGA
GGTATAGGGTATGTCGATACGCACATTCTGGCGTCTGTGCGGCTTACCGCTGGATCATTCCTATGGACACGCGACCGACG
ACTGCACAGTATCGCTTCGGAAATGGGCCTGGCCTGGACGCCACCTCATCCCCATTAA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 7168.29 Da
• Isoelectric Point: 6.3084

>AT64658 WP_043150025.1 NZ_CP016456:1348921-1349118 [Sphingobium sp. RAC03]
MRTTLALDDDLVAEAQELTGLKEKSALVREALKALVQREAARRLALLGGSEPDFELPPRRRSVPV

Nucleotide

• Length: 198 bp

>AT64658 NZ_CP016456:1348921-1349118 [Sphingobium sp. RAC03]
ATGCGCACGACATTGGCTCTTGATGACGATCTGGTTGCTGAAGCACAGGAACTGACCGGCTTGAAGGAAAAATCTGCCCT
CGTTCGCGAAGCGCTCAAAGCCCTAGTGCAGCGGGAAGCTGCACGTCGCCTGGCATTACTCGGCGGCTCGGAACCCGATT
TCGAGTTGCCGCCGCGGAGGCGATCAGTTCCGGTATGA

Structures

Antitoxin

• AlphaFold DB: A0A013XX06