Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 736497..737032 | Replicon | chromosome |
| Accession | NZ_CP016456 | ||
| Organism | Sphingobium sp. RAC03 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | BSY17_RS08065 | Protein ID | WP_171899205.1 |
| Coordinates | 736736..737032 (+) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A1B3MVC4 |
| Locus tag | BSY17_RS08060 | Protein ID | WP_069065127.1 |
| Coordinates | 736497..736739 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11320.80 Da Isoelectric Point: 6.3209
>T64657 WP_171899205.1 NZ_CP016456:736736-737032 [Sphingobium sp. RAC03]
VMRQIVLRPQAQDDIDKIWDYSAEQWDMDQADAYVGDIRAAIRFIATSPFIGTDCAHLARGLRKLNSGSHAIFYLHGNER
IDIVRILHQRADHLNYLE
VMRQIVLRPQAQDDIDKIWDYSAEQWDMDQADAYVGDIRAAIRFIATSPFIGTDCAHLARGLRKLNSGSHAIFYLHGNER
IDIVRILHQRADHLNYLE
Download Length: 297 bp
>T64657 NZ_CP016456:736736-737032 [Sphingobium sp. RAC03]
GTGATGCGTCAAATAGTCCTTCGGCCGCAAGCGCAGGATGATATCGACAAAATTTGGGATTATAGCGCCGAGCAATGGGA
CATGGATCAGGCGGACGCCTATGTTGGCGACATCCGCGCGGCCATACGATTTATTGCTACCAGCCCGTTCATAGGCACTG
ACTGCGCGCATCTGGCGCGCGGATTACGAAAATTGAATTCTGGTTCGCATGCGATCTTTTATCTGCATGGAAACGAACGC
ATTGATATCGTCCGCATCCTGCATCAGCGCGCGGATCATCTGAACTATCTGGAATGA
GTGATGCGTCAAATAGTCCTTCGGCCGCAAGCGCAGGATGATATCGACAAAATTTGGGATTATAGCGCCGAGCAATGGGA
CATGGATCAGGCGGACGCCTATGTTGGCGACATCCGCGCGGCCATACGATTTATTGCTACCAGCCCGTTCATAGGCACTG
ACTGCGCGCATCTGGCGCGCGGATTACGAAAATTGAATTCTGGTTCGCATGCGATCTTTTATCTGCATGGAAACGAACGC
ATTGATATCGTCCGCATCCTGCATCAGCGCGCGGATCATCTGAACTATCTGGAATGA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8824.82 Da Isoelectric Point: 5.1548
>AT64657 WP_069065127.1 NZ_CP016456:736497-736739 [Sphingobium sp. RAC03]
MSSKTTSVALGDHFREFAERKVSEGRYGSTSEVIRAGLRMLESEEQKLEALRAAIQEGLDSGPGQEFDFDAFLAAKRSAR
MSSKTTSVALGDHFREFAERKVSEGRYGSTSEVIRAGLRMLESEEQKLEALRAAIQEGLDSGPGQEFDFDAFLAAKRSAR
Download Length: 243 bp
>AT64657 NZ_CP016456:736497-736739 [Sphingobium sp. RAC03]
ATGAGCAGCAAGACCACCTCCGTCGCCTTGGGCGACCATTTCCGCGAGTTCGCCGAACGCAAGGTGAGCGAAGGCCGCTA
CGGATCGACCAGCGAAGTGATCCGCGCGGGATTGCGGATGCTGGAGTCGGAAGAGCAGAAACTGGAAGCGCTGAGGGCGG
CGATTCAGGAAGGGCTGGATAGCGGGCCAGGGCAAGAGTTTGACTTCGATGCATTTTTGGCCGCAAAAAGATCCGCTCGG
TGA
ATGAGCAGCAAGACCACCTCCGTCGCCTTGGGCGACCATTTCCGCGAGTTCGCCGAACGCAAGGTGAGCGAAGGCCGCTA
CGGATCGACCAGCGAAGTGATCCGCGCGGGATTGCGGATGCTGGAGTCGGAAGAGCAGAAACTGGAAGCGCTGAGGGCGG
CGATTCAGGAAGGGCTGGATAGCGGGCCAGGGCAAGAGTTTGACTTCGATGCATTTTTGGCCGCAAAAAGATCCGCTCGG
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|