Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-CC2985
Location 609910..610448 Replicon plasmid pBSY16_1
Accession NZ_CP016452
Organism Sinorhizobium sp. RAC02

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag BSY16_RS23965 Protein ID WP_069062329.1
Coordinates 610158..610448 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag BSY16_RS23960 Protein ID WP_069062328.1
Coordinates 609910..610161 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BSY16_RS31675 606279..606725 + 447 WP_083243097.1 hypothetical protein -
BSY16_RS31680 607633..607788 - 156 WP_083243224.1 DUF2274 domain-containing protein -
BSY16_RS31685 608778..609071 + 294 WP_171902479.1 hypothetical protein -
BSY16_RS23955 609087..609329 - 243 WP_069062327.1 hypothetical protein -
BSY16_RS23960 609910..610161 + 252 WP_069062328.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
BSY16_RS23965 610158..610448 + 291 WP_069062329.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BSY16_RS31695 611295..611624 - 330 Protein_588 transposase -
BSY16_RS32155 611965..612207 - 243 WP_150130129.1 DnaJ domain-containing protein -
BSY16_RS23970 612412..613869 - 1458 WP_069062330.1 aspartate ammonia-lyase -
BSY16_RS23975 613909..614610 - 702 WP_069062331.1 ABC transporter ATP-binding protein -
BSY16_RS23980 614603..615394 - 792 WP_069062332.1 ABC transporter ATP-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - katA 1..2220160 2220160


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-91)

Antitoxin

Antitoxin ParD

(3-70)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11069.53 Da        Isoelectric Point: 5.9594

>T64652 WP_069062329.1 NZ_CP016452:610158-610448 [Sinorhizobium sp. RAC02]
MKYRTTRLADQDIIDLYGHGVRDFGVAQAERYIEGLFSAFELLADNPYIARERTELNPPTHLHPYGSHMIAYVVQDEGVL
IVRVLHGRQDWQTLLS

Download         Length: 291 bp

>T64652 NZ_CP016452:610158-610448 [Sinorhizobium sp. RAC02]
ATGAAGTACCGCACAACCCGTTTAGCGGATCAGGACATCATCGACCTCTATGGGCACGGCGTCAGAGATTTTGGCGTTGC
ACAGGCCGAGCGTTACATTGAAGGTCTGTTTTCAGCGTTCGAGCTTCTGGCCGACAATCCCTACATCGCGCGCGAGCGCA
CAGAACTTAATCCGCCGACACATCTTCATCCCTATGGATCACACATGATTGCCTACGTCGTGCAGGACGAGGGCGTTCTC
ATCGTGCGCGTTCTCCATGGGCGACAGGACTGGCAAACGCTGCTGTCCTAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9250.41 Da        Isoelectric Point: 8.5611

>AT64652 WP_069062328.1 NZ_CP016452:609910-610161 [Sinorhizobium sp. RAC02]
MATMNVSLPDPMKDWVEAQARTGRYSNASDYVRDLIRRDQDRADKIAELQRLVTEGLESGVSTRSKSDILEAARKQAAIV
RGA

Download         Length: 252 bp

>AT64652 NZ_CP016452:609910-610161 [Sinorhizobium sp. RAC02]
ATGGCTACAATGAACGTGTCACTGCCTGATCCGATGAAAGACTGGGTTGAGGCGCAGGCTCGCACCGGCAGATATAGTAA
TGCAAGCGACTACGTGCGCGACCTCATACGCCGCGATCAGGACCGGGCAGACAAGATCGCCGAACTGCAACGGCTTGTCA
CCGAGGGCTTGGAGAGCGGCGTAAGCACACGCTCAAAGTCGGACATACTGGAAGCCGCCCGTAAGCAAGCAGCCATTGTG
CGGGGCGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References