Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2595771..2596042 | Replicon | chromosome |
| Accession | NZ_CP016404 | ||
| Organism | Escherichia coli strain 210221272 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2595809..2595912 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2595771..2596042 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBP24_RS12835 | 2592928..2594367 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BBP24_RS12840 | 2594485..2594721 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| BBP24_RS12845 | 2594826..2595017 | + | 192 | WP_001338167.1 | YebW family protein | - |
| BBP24_RS12850 | 2595018..2595674 | - | 657 | WP_069684393.1 | protein-serine/threonine phosphatase | - |
| - | 2595771..2596042 | + | 272 | - | - | Antitoxin |
| - | 2595809..2595912 | - | 104 | - | - | Toxin |
| BBP24_RS12860 | 2596070..2596411 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BBP24_RS12865 | 2596424..2597296 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| BBP24_RS12870 | 2597300..2597674 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BBP24_RS12875 | 2597813..2598043 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BBP24_RS12880 | 2598145..2598801 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BBP24_RS12885 | 2598825..2599487 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T64580 NZ_CP016404:c2595912-2595809 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT64580 NZ_CP016404:2595771-2596042 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
