Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 293362..293630 | Replicon | chromosome |
| Accession | NZ_CP016358 | ||
| Organism | Escherichia coli strain K-15KW01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 293400..293502 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 293362..293630 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA058_RS01555 | 290519..291958 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BA058_RS01560 | 292076..292312 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BA058_RS01565 | 292417..292608 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BA058_RS01570 | 292609..293265 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 293362..293630 | + | 269 | - | - | Antitoxin |
| - | 293400..293502 | - | 103 | - | - | Toxin |
| BA058_RS01580 | 293660..294001 | - | 342 | WP_000984819.1 | YebY family protein | - |
| BA058_RS01585 | 294014..294886 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| BA058_RS01590 | 294890..295264 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BA058_RS01595 | 295403..295633 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BA058_RS01600 | 295736..296392 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| BA058_RS01605 | 296416..297078 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T64498 NZ_CP016358:c293502-293400 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT64498 NZ_CP016358:293362-293630 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
