Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1923670..1923814 | Replicon | chromosome |
| Accession | NZ_CP016344 | ||
| Organism | Klebsiella variicola strain E57-7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1923706..1923808 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1923670..1923814 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBB54_RS09520 | 1918799..1920860 | + | 2062 | Protein_1810 | oligopeptidase B | - |
| BBB54_RS09525 | 1920864..1921523 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| BBB54_RS09530 | 1921602..1921832 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| BBB54_RS09535 | 1921946..1922320 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| BBB54_RS09540 | 1922324..1923193 | + | 870 | WP_032754744.1 | copper homeostasis membrane protein CopD | - |
| BBB54_RS09545 | 1923210..1923548 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1923670..1923814 | - | 145 | - | - | Antitoxin |
| - | 1923706..1923808 | + | 103 | - | - | Toxin |
| BBB54_RS27120 | 1924193..1924336 | - | 144 | WP_046878768.1 | Ecr family regulatory small membrane protein | - |
| BBB54_RS09555 | 1924440..1925408 | - | 969 | WP_162708818.1 | VirK/YbjX family protein | - |
| BBB54_RS09560 | 1925565..1926218 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| BBB54_RS09565 | 1926215..1926406 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BBB54_RS09570 | 1926504..1926743 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BBB54_RS09575 | 1926859..1928292 | - | 1434 | WP_032754740.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T64479 NZ_CP016344:1923706-1923808 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT64479 NZ_CP016344:c1923814-1923670 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
