Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 3835744..3836497 Replicon chromosome
Accession NZ_CP016294
Organism Stenotrophomonas rhizophila strain QL-P4

Toxin (Protein)


Gene name ataT Uniprot ID -
Locus tag BAY15_RS17115 Protein ID WP_068854190.1
Coordinates 3835744..3836223 (-) Length 160 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag BAY15_RS17120 Protein ID WP_083214290.1
Coordinates 3836228..3836497 (-) Length 90 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BAY15_RS17090 3832085..3832705 - 621 WP_068854185.1 glutathione S-transferase -
BAY15_RS17095 3832939..3834249 + 1311 WP_068854186.1 NAD(P)/FAD-dependent oxidoreductase -
BAY15_RS17100 3834222..3834539 - 318 WP_068854187.1 hypothetical protein -
BAY15_RS17105 3834536..3834808 - 273 WP_068854188.1 GIY-YIG nuclease family protein -
BAY15_RS17110 3835130..3835747 + 618 WP_068854189.1 trimeric intracellular cation channel family protein -
BAY15_RS17115 3835744..3836223 - 480 WP_068854190.1 GNAT family N-acetyltransferase Toxin
BAY15_RS17120 3836228..3836497 - 270 WP_083214290.1 DUF1778 domain-containing protein Antitoxin
BAY15_RS17125 3836681..3837754 - 1074 WP_068854192.1 3-deoxy-7-phosphoheptulonate synthase -
BAY15_RS17130 3838056..3839219 + 1164 WP_068854193.1 serine hydrolase -
BAY15_RS17135 3839289..3840938 - 1650 WP_068854194.1 chaperonin GroEL -
BAY15_RS17140 3841029..3841316 - 288 WP_068854195.1 co-chaperone GroES -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(42-144)

Antitoxin

Vibrio phage ICP1, Orf50

(3-88)


Sequences

Toxin        


Download         Length: 160 a.a.        Molecular weight: 17149.03 Da        Isoelectric Point: 8.7730

>T64378 WP_068854190.1 NZ_CP016294:c3836223-3835744 [Stenotrophomonas rhizophila]
MWLSAPTPLHAEHLLDDFRCSAPALAKWLLERARQNQASGASRCFVACDEQRRVVGYYALSAGSIAHDAVPGRIRRNMPD
PIPVIVLGRLAVHADRAGQGIGQGLLKDAVLRSLQACGQVGARALLCHAIDEPAKAFYLKHGFIASPIHPLTLMLPLAC

Download         Length: 480 bp

>T64378 NZ_CP016294:c3836223-3835744 [Stenotrophomonas rhizophila]
TTGTGGCTCTCCGCTCCAACCCCGCTGCACGCGGAACATCTGTTGGATGACTTCCGCTGCAGTGCTCCAGCCTTGGCGAA
ATGGCTGCTTGAACGCGCACGCCAGAACCAGGCATCCGGCGCATCACGATGCTTCGTGGCCTGCGACGAGCAGCGTCGCG
TTGTCGGTTATTACGCGCTTTCAGCCGGCTCGATAGCGCATGACGCCGTGCCCGGACGAATCCGCCGCAACATGCCCGAT
CCCATTCCGGTCATCGTGTTGGGGCGGTTGGCGGTACATGCGGACAGGGCGGGGCAAGGCATTGGCCAGGGCTTGTTGAA
GGATGCGGTGCTACGTTCGCTGCAGGCGTGCGGTCAGGTCGGCGCACGGGCGTTGCTCTGCCATGCCATCGATGAGCCCG
CCAAGGCGTTCTACCTCAAGCACGGTTTCATCGCTTCACCCATTCACCCTCTGACGCTGATGCTGCCCCTTGCGTGCTAA

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9938.28 Da        Isoelectric Point: 4.7419

>AT64378 WP_083214290.1 NZ_CP016294:c3836497-3836228 [Stenotrophomonas rhizophila]
MGTASKVINFRAPADKQDLIDRAVAISGVNRTEFILDAACDRAREVLADQTQFTLNAEQLQRFNALLDAPLEDNLALRRL
LSTPAPWER

Download         Length: 270 bp

>AT64378 NZ_CP016294:c3836497-3836228 [Stenotrophomonas rhizophila]
ATGGGAACCGCAAGCAAAGTCATCAATTTCCGGGCCCCTGCCGATAAGCAGGATCTGATCGATCGTGCCGTAGCAATCAG
TGGCGTGAATCGCACCGAGTTCATCCTGGATGCCGCTTGCGACAGGGCGCGCGAGGTGCTGGCCGACCAGACGCAGTTCA
CGTTGAATGCCGAGCAGCTGCAGCGCTTCAATGCGCTGCTGGACGCGCCGCTGGAGGACAACCTGGCGCTGCGCCGGTTG
TTGAGCACGCCGGCGCCCTGGGAACGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References