Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1765163..1765257 Replicon chromosome
Accession NZ_CP016273
Organism Yersinia pestis strain Cadman

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1765163..1765256 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1765163..1765257 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BAY22_RS07760 1760736..1761686 + 951 WP_002211090.1 prolyl aminopeptidase -
BAY22_RS07765 1761746..1761976 - 231 WP_002211091.1 DNA polymerase III subunit theta -
BAY22_RS07770 1762377..1762886 + 510 WP_002211092.1 non-heme ferritin -
BAY22_RS07775 1763282..1763668 + 387 WP_002211093.1 CopC domain-containing protein YobA -
BAY22_RS07780 1763671..1764555 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
BAY22_RS07785 1764652..1764993 + 342 WP_002211095.1 YebY family protein -
- 1765163..1765256 + 94 - - Toxin
- 1765163..1765257 - 95 - - Antitoxin
BAY22_RS07795 1765516..1765842 - 327 WP_002211097.1 DUF1493 family protein -
BAY22_RS07800 1765836..1766294 - 459 WP_002211098.1 hypothetical protein -
BAY22_RS07805 1766826..1767986 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
BAY22_RS07810 1767986..1770064 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T64349 NZ_CP016273:1765163-1765256 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT64349 NZ_CP016273:c1765257-1765163 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References