Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2340283..2340554 | Replicon | chromosome |
| Accession | NZ_CP016182 | ||
| Organism | Escherichia coli strain EC590 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2340413..2340516 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2340283..2340554 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAY41_RS11840 | 2336839..2337501 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BAY41_RS11845 | 2337525..2338181 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BAY41_RS11850 | 2338283..2338513 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BAY41_RS11855 | 2338652..2339026 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BAY41_RS11860 | 2339030..2339901 | + | 872 | Protein_2156 | copper homeostasis membrane protein CopD | - |
| BAY41_RS11865 | 2339914..2340255 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2340283..2340554 | - | 272 | - | - | Antitoxin |
| - | 2340413..2340516 | + | 104 | - | - | Toxin |
| BAY41_RS11870 | 2340651..2341307 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| BAY41_RS11875 | 2341308..2341499 | - | 192 | WP_000457842.1 | YebW family protein | - |
| BAY41_RS11880 | 2341604..2341840 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BAY41_RS11885 | 2341958..2343397 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T64312 NZ_CP016182:2340413-2340516 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT64312 NZ_CP016182:c2340554-2340283 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
