Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4407925..4408070 | Replicon | chromosome |
| Accession | NZ_CP016159 | ||
| Organism | Klebsiella pneumoniae strain TH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4407961..4408063 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4407925..4408070 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAU11_RS21530 | 4403055..4405115 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BAU11_RS21535 | 4405119..4405778 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BAU11_RS21540 | 4405857..4406087 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BAU11_RS21545 | 4406200..4406574 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BAU11_RS21550 | 4406578..4407447 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| BAU11_RS21555 | 4407464..4407802 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4407925..4408070 | - | 146 | - | - | Antitoxin |
| - | 4407961..4408063 | + | 103 | - | - | Toxin |
| BAU11_RS29010 | 4408438..4408581 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BAU11_RS21565 | 4408686..4409654 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BAU11_RS21570 | 4409811..4410464 | + | 654 | WP_064081141.1 | protein-serine/threonine phosphatase | - |
| BAU11_RS21575 | 4410461..4410652 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BAU11_RS21580 | 4410750..4410989 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BAU11_RS21585 | 4411105..4412538 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T64252 NZ_CP016159:4407961-4408063 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT64252 NZ_CP016159:c4408070-4407925 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
