Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1719891..1719986 | Replicon | chromosome |
| Accession | NZ_CP016044 | ||
| Organism | Edwardsiella piscicida strain S11-285 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1719898..1719986 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1719891..1719986 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9797_RS17910 | 1715495..1716709 | - | 1215 | WP_071890384.1 | DUF1028 domain-containing protein | - |
| A9797_RS07665 | 1717762..1718058 | - | 297 | WP_012848441.1 | antibiotic biosynthesis monooxygenase | - |
| A9797_RS07670 | 1718100..1718495 | - | 396 | WP_015461418.1 | VOC family protein | - |
| A9797_RS17915 | 1718715..1718996 | - | 282 | WP_015461419.1 | ribbon-helix-helix domain-containing protein | - |
| A9797_RS07675 | 1719276..1719780 | - | 505 | Protein_1502 | tyrosine-type recombinase/integrase | - |
| - | 1719891..1719986 | - | 96 | - | - | Antitoxin |
| - | 1719898..1719986 | + | 89 | - | - | Toxin |
| A9797_RS07680 | 1720025..1721119 | - | 1095 | WP_069578521.1 | tyrosine-type recombinase/integrase | - |
| A9797_RS07685 | 1721106..1721354 | - | 249 | WP_015871361.1 | excisionase | - |
| A9797_RS07690 | 1721454..1721732 | + | 279 | WP_069578523.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A9797_RS07695 | 1721732..1722019 | + | 288 | WP_069578525.1 | HigA family addiction module antidote protein | - |
| A9797_RS18655 | 1722102..1722761 | - | 660 | WP_071890273.1 | hypothetical protein | - |
| A9797_RS18875 | 1723271..1723720 | - | 450 | Protein_1508 | hypothetical protein | - |
| A9797_RS18880 | 1723709..1724029 | - | 321 | Protein_1509 | antA/AntB antirepressor family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1718715..1784211 | 65496 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 bp
>T64183 NZ_CP016044:1719898-1719986 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGT
Antitoxin
Download Length: 96 bp
>AT64183 NZ_CP016044:c1719986-1719891 [Edwardsiella piscicida]
ACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCATTATGCAGGCATTGA
GTGCCTTGCTCTATAA
ACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCATTATGCAGGCATTGA
GTGCCTTGCTCTATAA
