Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2689343..2689614 Replicon chromosome
Accession NZ_CP015995
Organism Escherichia coli strain S51

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2689381..2689484 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2689343..2689614 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A9K64_RS13560 2686500..2687939 + 1440 WP_001307251.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
A9K64_RS13565 2688057..2688293 + 237 WP_001295499.1 DUF1480 family protein -
A9K64_RS13570 2688398..2688589 + 192 WP_001296140.1 YebW family protein -
A9K64_RS13575 2688590..2689246 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2689343..2689614 + 272 - - Antitoxin
- 2689381..2689484 - 104 - - Toxin
A9K64_RS13585 2689642..2689983 - 342 WP_000976472.1 YebY family protein -
A9K64_RS13590 2689996..2690868 - 873 WP_000879282.1 copper homeostasis membrane protein CopD -
A9K64_RS13595 2690872..2691246 - 375 WP_000204699.1 CopC domain-containing protein YobA -
A9K64_RS13600 2691385..2691615 + 231 WP_000916763.1 DNA polymerase III subunit theta -
A9K64_RS13605 2691717..2692373 + 657 WP_000011652.1 carbon-nitrogen hydrolase family protein -
A9K64_RS13610 2692397..2693059 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T64065 NZ_CP015995:c2689484-2689381 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT64065 NZ_CP015995:2689343-2689614 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References