Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008162..2008307 | Replicon | chromosome |
| Accession | NZ_CP015990 | ||
| Organism | Klebsiella pneumoniae strain BR | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008198..2008300 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008162..2008307 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9J37_RS09720 | 2003292..2005352 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A9J37_RS09725 | 2005356..2006015 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| A9J37_RS09730 | 2006094..2006324 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A9J37_RS09735 | 2006437..2006811 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A9J37_RS09740 | 2006815..2007684 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| A9J37_RS09745 | 2007701..2008039 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2008162..2008307 | - | 146 | - | - | Antitoxin |
| - | 2008198..2008300 | + | 103 | - | - | Toxin |
| A9J37_RS28520 | 2008676..2008819 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A9J37_RS09755 | 2008924..2009892 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A9J37_RS09760 | 2010049..2010702 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| A9J37_RS09765 | 2010699..2010890 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A9J37_RS09770 | 2010988..2011227 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A9J37_RS09775 | 2011343..2012776 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T64029 NZ_CP015990:2008198-2008300 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT64029 NZ_CP015990:c2008307-2008162 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
