Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 794772..795043 | Replicon | chromosome |
| Accession | NZ_CP015912 | ||
| Organism | Escherichia coli strain 210205630 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 794810..794913 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 794772..795043 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9C00_RS04000 | 791929..793368 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A9C00_RS04005 | 793486..793722 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A9C00_RS04010 | 793827..794018 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A9C00_RS04015 | 794019..794675 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 794772..795043 | + | 272 | - | - | Antitoxin |
| - | 794810..794913 | - | 104 | - | - | Toxin |
| A9C00_RS04025 | 795071..795412 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A9C00_RS04030 | 795425..796297 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A9C00_RS04035 | 796301..796675 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| A9C00_RS04040 | 796814..797044 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A9C00_RS04045 | 797146..797802 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| A9C00_RS04050 | 797826..798488 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T63897 NZ_CP015912:c794913-794810 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT63897 NZ_CP015912:794772-795043 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
