Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 243501..243772 | Replicon | chromosome |
| Accession | NZ_CP015853 | ||
| Organism | Escherichia coli strain ATCC 43889 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 243631..243734 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 243501..243772 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8714_RS01475 | 240056..240718 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| A8714_RS01480 | 240742..241398 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A8714_RS01485 | 241500..241730 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A8714_RS01490 | 241869..242243 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A8714_RS01495 | 242247..243119 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A8714_RS01500 | 243132..243473 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 243501..243772 | - | 272 | - | - | Antitoxin |
| - | 243631..243734 | + | 104 | - | - | Toxin |
| A8714_RS01505 | 243869..244525 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| A8714_RS01510 | 244526..244717 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A8714_RS01515 | 244822..245058 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A8714_RS01520 | 245176..246615 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T63783 NZ_CP015853:243631-243734 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT63783 NZ_CP015853:c243772-243501 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
