Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2556147..2556418 | Replicon | chromosome |
| Accession | NZ_CP015843 | ||
| Organism | Escherichia coli O157:H7 strain FRIK2455 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2556185..2556288 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2556147..2556418 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8V32_RS13950 | 2553304..2554743 | + | 1440 | WP_064261958.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A8V32_RS13955 | 2554861..2555097 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A8V32_RS13960 | 2555202..2555393 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A8V32_RS13965 | 2555394..2556050 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2556147..2556418 | + | 272 | - | - | Antitoxin |
| - | 2556185..2556288 | - | 104 | - | - | Toxin |
| A8V32_RS13970 | 2556446..2556787 | - | 342 | WP_000976483.1 | YebY family protein | - |
| A8V32_RS13975 | 2556800..2557672 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A8V32_RS13980 | 2557676..2558050 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A8V32_RS13985 | 2558189..2558419 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A8V32_RS13990 | 2558521..2559177 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A8V32_RS13995 | 2559201..2559863 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T63703 NZ_CP015843:c2556288-2556185 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT63703 NZ_CP015843:2556147-2556418 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
