Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2556138..2556409 | Replicon | chromosome |
| Accession | NZ_CP015842 | ||
| Organism | Escherichia coli O157:H7 strain FRIK2533 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2556176..2556279 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2556138..2556409 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8V31_RS13940 | 2553295..2554734 | + | 1440 | WP_064261958.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A8V31_RS13945 | 2554852..2555088 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A8V31_RS13950 | 2555193..2555384 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A8V31_RS13955 | 2555385..2556041 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2556138..2556409 | + | 272 | - | - | Antitoxin |
| - | 2556176..2556279 | - | 104 | - | - | Toxin |
| A8V31_RS13960 | 2556437..2556790 | - | 354 | WP_000384361.1 | YebY family protein | - |
| A8V31_RS13965 | 2556790..2557662 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A8V31_RS13970 | 2557666..2558040 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A8V31_RS13975 | 2558178..2558408 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A8V31_RS13980 | 2558510..2559166 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A8V31_RS13985 | 2559190..2559852 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T63661 NZ_CP015842:c2556279-2556176 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT63661 NZ_CP015842:2556138-2556409 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
