Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2731636..2731811 | Replicon | chromosome |
| Accession | NZ_CP015774 | ||
| Organism | Lelliottia amnigena strain ZB04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2731643..2731742 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2731636..2731811 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8A57_RS13110 | 2728852..2729892 | + | 1041 | WP_064326489.1 | recombinase RecT | - |
| A8A57_RS13115 | 2729932..2730174 | + | 243 | WP_064326490.1 | DUF4060 family protein | - |
| A8A57_RS13120 | 2730239..2730511 | + | 273 | WP_064326491.1 | excisionase | - |
| A8A57_RS13125 | 2730480..2731565 | + | 1086 | WP_064326492.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2731636..2731811 | + | 176 | - | - | Antitoxin |
| - | 2731643..2731742 | - | 100 | - | - | Toxin |
| A8A57_RS13130 | 2731887..2732225 | - | 339 | WP_064326493.1 | YebY family protein | - |
| A8A57_RS13135 | 2732240..2733112 | - | 873 | WP_064326494.1 | copper homeostasis membrane protein CopD | - |
| A8A57_RS13140 | 2733114..2733488 | - | 375 | WP_064326495.1 | CopC domain-containing protein YobA | - |
| A8A57_RS13145 | 2733626..2733856 | + | 231 | WP_064326496.1 | DNA polymerase III subunit theta | - |
| A8A57_RS13150 | 2733966..2734622 | + | 657 | WP_064328153.1 | carbon-nitrogen hydrolase family protein | - |
| A8A57_RS13155 | 2734647..2735309 | + | 663 | WP_064326497.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2675667..2737366 | 61699 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 bp
>T63462 NZ_CP015774:c2731742-2731643 [Lelliottia amnigena]
AGGCGACTTCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGA
ATCGTATTCGGTCTCTTTTT
AGGCGACTTCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGA
ATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 176 bp
>AT63462 NZ_CP015774:2731636-2731811 [Lelliottia amnigena]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCGAAGTCGCCTGACACCTTAAGAATAGATGACGTCGCCAGGTTTTCCAGTCCGCAGCCAAAGTG
GTCGGAAAAAAAGCGT
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCGAAGTCGCCTGACACCTTAAGAATAGATGACGTCGCCAGGTTTTCCAGTCCGCAGCCAAAGTG
GTCGGAAAAAAAGCGT
