Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 844966..845111 | Replicon | chromosome |
| Accession | NZ_CP015753 | ||
| Organism | Klebsiella pneumoniae strain W14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 844973..845075 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 844966..845111 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7321_RS04275 | 840498..841931 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7321_RS04280 | 842047..842286 | + | 240 | WP_002911393.1 | YebV family protein | - |
| A7321_RS04285 | 842384..842575 | + | 192 | WP_002911395.1 | YebW family protein | - |
| A7321_RS04290 | 842572..843225 | - | 654 | WP_064081141.1 | protein-serine/threonine phosphatase | - |
| A7321_RS04295 | 843382..844350 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A7321_RS28680 | 844455..844598 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 844966..845111 | + | 146 | - | - | Antitoxin |
| - | 844973..845075 | - | 103 | - | - | Toxin |
| A7321_RS04305 | 845234..845572 | - | 339 | WP_002911404.1 | YebY family protein | - |
| A7321_RS04310 | 845589..846458 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| A7321_RS04315 | 846462..846836 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A7321_RS04320 | 846949..847179 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A7321_RS04325 | 847258..847917 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| A7321_RS04330 | 847921..849981 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T63355 NZ_CP015753:c845075-844973 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT63355 NZ_CP015753:844966-845111 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
