Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2066694..2066836 | Replicon | chromosome |
| Accession | NZ_CP015613 | ||
| Organism | Serratia inhibens PRI-2C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2066738..2066834 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2066694..2066836 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5A_RS09630 | 2061922..2062347 | + | 426 | WP_006317268.1 | RNA polymerase-binding protein DksA | - |
| Q5A_RS09635 | 2062507..2063460 | + | 954 | WP_004943115.1 | prolyl aminopeptidase | - |
| Q5A_RS09640 | 2063490..2063720 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| Q5A_RS09645 | 2064093..2064611 | + | 519 | WP_065506133.1 | non-heme ferritin | - |
| Q5A_RS09650 | 2064918..2065301 | + | 384 | WP_065506134.1 | CopC domain-containing protein YobA | - |
| Q5A_RS09655 | 2065304..2066185 | + | 882 | WP_065506135.1 | copper homeostasis membrane protein CopD | - |
| Q5A_RS09660 | 2066255..2066596 | + | 342 | WP_004943126.1 | YebY family protein | - |
| - | 2066694..2066836 | - | 143 | - | - | Antitoxin |
| - | 2066738..2066834 | + | 97 | - | - | Toxin |
| Q5A_RS25475 | 2066922..2067635 | - | 714 | Protein_1904 | tyrosine-type recombinase/integrase | - |
| Q5A_RS26075 | 2067820..2068668 | + | 849 | Protein_1905 | phage repressor protein CI | - |
| Q5A_RS09675 | 2068682..2069137 | + | 456 | WP_065506137.1 | hypothetical protein | - |
| Q5A_RS09680 | 2069340..2069834 | - | 495 | WP_065506138.1 | tyrosine-type recombinase/integrase | - |
| Q5A_RS09685 | 2070262..2070966 | + | 705 | WP_065506139.1 | hypothetical protein | - |
| Q5A_RS25490 | 2071247..2071585 | - | 339 | Protein_1909 | alpha/beta hydrolase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2058037..2073726 | 15689 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T63251 NZ_CP015613:2066738-2066834 [Serratia inhibens PRI-2C]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT63251 NZ_CP015613:c2066836-2066694 [Serratia inhibens PRI-2C]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
