Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | TsdAT/- |
Location | 955638..956149 | Replicon | chromosome |
Accession | NZ_CP015536 | ||
Organism | Staphylococcus carnosus strain TMW 2.243 |
Toxin (Protein)
Gene name | TsdT | Uniprot ID | B9DMH5 |
Locus tag | A2I63_RS04480 | Protein ID | WP_015900832.1 |
Coordinates | 955943..956149 (+) | Length | 69 a.a. |
Antitoxin (Protein)
Gene name | TsdA | Uniprot ID | B9DMH6 |
Locus tag | A2I63_RS04475 | Protein ID | WP_015900833.1 |
Coordinates | 955638..955931 (+) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A2I63_RS04450 (A2I63_04360) | 951010..951648 | + | 639 | WP_015900838.1 | thiamine phosphate synthase | - |
A2I63_RS04455 (A2I63_04365) | 951737..952606 | + | 870 | WP_015900837.1 | membrane protein insertase YidC | - |
A2I63_RS04460 (A2I63_04370) | 952717..953229 | + | 513 | WP_015900836.1 | GNAT family N-acetyltransferase | - |
A2I63_RS04465 (A2I63_04375) | 953320..953967 | - | 648 | WP_015900835.1 | HD domain-containing protein | - |
A2I63_RS04470 (A2I63_04380) | 953992..955473 | - | 1482 | WP_015900834.1 | cardiolipin synthase | - |
A2I63_RS04475 (A2I63_04385) | 955638..955931 | + | 294 | WP_015900833.1 | copper-sensing transcriptional repressor CsoR | Antitoxin |
A2I63_RS04480 (A2I63_04390) | 955943..956149 | + | 207 | WP_015900832.1 | heavy metal-associated domain-containing protein | Toxin |
A2I63_RS04485 (A2I63_04395) | 956164..956373 | + | 210 | WP_015900831.1 | copper ion binding protein | - |
A2I63_RS04490 (A2I63_04400) | 956470..958671 | + | 2202 | WP_015900830.1 | heavy metal translocating P-type ATPase | - |
A2I63_RS04495 | 958747..958887 | + | 141 | WP_167313208.1 | Lmo0850 family protein | - |
A2I63_RS04500 (A2I63_04405) | 958959..960176 | - | 1218 | WP_015900829.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 69 a.a. Molecular weight: 7833.72 Da Isoelectric Point: 4.1353
>T63173 WP_015900832.1 NZ_CP015536:955943-956149 [Staphylococcus carnosus]
MQNSVIKIDGMETEEEQHKLHQHLIEMTGVSAVQVDMDSNEVRISYETPVNLNNLEKEIYDAGYQILN
MQNSVIKIDGMETEEEQHKLHQHLIEMTGVSAVQVDMDSNEVRISYETPVNLNNLEKEIYDAGYQILN
Download Length: 207 bp
>T63173 NZ_CP015536:955943-956149 [Staphylococcus carnosus]
ATGCAAAATAGTGTAATTAAAATTGATGGAATGGAAACTGAAGAAGAACAGCATAAATTGCATCAACATCTTATAGAAAT
GACAGGTGTATCTGCAGTGCAAGTGGATATGGATTCAAATGAAGTCAGAATCAGTTATGAAACACCTGTAAATCTCAATA
ATCTTGAAAAAGAAATCTATGATGCAGGTTATCAAATATTAAATTAG
ATGCAAAATAGTGTAATTAAAATTGATGGAATGGAAACTGAAGAAGAACAGCATAAATTGCATCAACATCTTATAGAAAT
GACAGGTGTATCTGCAGTGCAAGTGGATATGGATTCAAATGAAGTCAGAATCAGTTATGAAACACCTGTAAATCTCAATA
ATCTTGAAAAAGAAATCTATGATGCAGGTTATCAAATATTAAATTAG
Antitoxin
Download Length: 98 a.a. Molecular weight: 11132.76 Da Isoelectric Point: 6.4862
>AT63173 WP_015900833.1 NZ_CP015536:955638-955931 [Staphylococcus carnosus]
MTENDKAHHSEQIKSNLKARLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAVRLLDHHMKGCIMHKVEDGHA
EEAMEELLVTVQKLIKD
MTENDKAHHSEQIKSNLKARLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAVRLLDHHMKGCIMHKVEDGHA
EEAMEELLVTVQKLIKD
Download Length: 294 bp
>AT63173 NZ_CP015536:955638-955931 [Staphylococcus carnosus]
ATGACCGAAAATGATAAAGCGCACCATTCAGAACAAATCAAATCCAACTTGAAAGCACGACTCAATCGAATTGAAGGACA
AGTCAGAGCAATTAACCGAATGATTGAAGAGGATGTATATTGTGATGATGTACTCACACAAATCCGTGCAACACGTTCAG
CTTTGAACAGTGTGGCAGTACGATTGCTTGATCATCACATGAAAGGTTGTATCATGCATAAAGTTGAGGATGGTCACGCT
GAAGAAGCGATGGAAGAATTGCTTGTTACCGTTCAAAAATTGATTAAAGATTAA
ATGACCGAAAATGATAAAGCGCACCATTCAGAACAAATCAAATCCAACTTGAAAGCACGACTCAATCGAATTGAAGGACA
AGTCAGAGCAATTAACCGAATGATTGAAGAGGATGTATATTGTGATGATGTACTCACACAAATCCGTGCAACACGTTCAG
CTTTGAACAGTGTGGCAGTACGATTGCTTGATCATCACATGAAAGGTTGTATCATGCATAAAGTTGAGGATGGTCACGCT
GAAGAAGCGATGGAAGAATTGCTTGTTACCGTTCAAAAATTGATTAAAGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A380F432 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A380F6K8 |