Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1838905..1839050 | Replicon | chromosome |
| Accession | NZ_CP015500 | ||
| Organism | Klebsiella pneumoniae strain SKGH01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1838941..1839043 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1838905..1839050 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7B01_RS09040 | 1834035..1836095 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A7B01_RS09045 | 1836099..1836758 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| A7B01_RS09050 | 1836837..1837067 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A7B01_RS09055 | 1837180..1837554 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| A7B01_RS09060 | 1837558..1838427 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| A7B01_RS09065 | 1838444..1838782 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1838905..1839050 | - | 146 | - | - | Antitoxin |
| - | 1838941..1839043 | + | 103 | - | - | Toxin |
| A7B01_RS32630 | 1839419..1839562 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| A7B01_RS09075 | 1839667..1840635 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| A7B01_RS09080 | 1840792..1841445 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| A7B01_RS09085 | 1841442..1841633 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A7B01_RS09090 | 1841731..1841970 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A7B01_RS09095 | 1842086..1843519 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T63119 NZ_CP015500:1838941-1839043 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT63119 NZ_CP015500:c1839050-1838905 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
