Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2132607..2132752 | Replicon | chromosome |
| Accession | NZ_CP015392 | ||
| Organism | Klebsiella pneumoniae strain CR14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2132643..2132745 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2132607..2132752 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6P37_RS10560 | 2127737..2129797 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A6P37_RS10565 | 2129801..2130460 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| A6P37_RS10570 | 2130539..2130769 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A6P37_RS10575 | 2130882..2131256 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A6P37_RS10580 | 2131260..2132129 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| A6P37_RS10585 | 2132146..2132484 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2132607..2132752 | - | 146 | - | - | Antitoxin |
| - | 2132643..2132745 | + | 103 | - | - | Toxin |
| A6P37_RS31175 | 2133120..2133263 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A6P37_RS10595 | 2133368..2134336 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A6P37_RS10600 | 2134493..2135146 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| A6P37_RS10605 | 2135143..2135334 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A6P37_RS10610 | 2135432..2135671 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A6P37_RS10615 | 2135787..2137220 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T63020 NZ_CP015392:2132643-2132745 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT63020 NZ_CP015392:c2132752-2132607 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
