Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5270684..5271309 Replicon chromosome
Accession NZ_CP015385
Organism Klebsiella pneumoniae strain NY9

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag A6P56_RS27730 Protein ID WP_002882817.1
Coordinates 5270684..5271067 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag A6P56_RS27735 Protein ID WP_004150355.1
Coordinates 5271067..5271309 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A6P56_RS27715 5268050..5268952 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
A6P56_RS27720 5268949..5269584 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
A6P56_RS27725 5269581..5270510 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
A6P56_RS27730 5270684..5271067 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
A6P56_RS27735 5271067..5271309 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
A6P56_RS27740 5271514..5272431 + 918 WP_002882812.1 alpha/beta hydrolase -
A6P56_RS27745 5272445..5273386 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
A6P56_RS27750 5273431..5273868 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
A6P56_RS27755 5273865..5274725 - 861 WP_002882807.1 virulence factor BrkB family protein -
A6P56_RS27760 5274719..5275318 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T63008 WP_002882817.1 NZ_CP015385:c5271067-5270684 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T63008 NZ_CP015385:c5271067-5270684 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT63008 WP_004150355.1 NZ_CP015385:c5271309-5271067 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT63008 NZ_CP015385:c5271309-5271067 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References