Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966055..1966200 | Replicon | chromosome |
| Accession | NZ_CP015385 | ||
| Organism | Klebsiella pneumoniae strain NY9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966091..1966193 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966055..1966200 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6P56_RS10205 | 1961185..1963245 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A6P56_RS10215 | 1963249..1963908 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| A6P56_RS10220 | 1963987..1964217 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A6P56_RS10225 | 1964330..1964704 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A6P56_RS10230 | 1964708..1965577 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| A6P56_RS10235 | 1965594..1965932 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1966055..1966200 | - | 146 | - | - | Antitoxin |
| - | 1966091..1966193 | + | 103 | - | - | Toxin |
| A6P56_RS33195 | 1966568..1966711 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A6P56_RS10250 | 1966816..1967784 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A6P56_RS10255 | 1967941..1968594 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| A6P56_RS10260 | 1968591..1968782 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A6P56_RS10265 | 1968880..1969119 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A6P56_RS10270 | 1969235..1970668 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62995 NZ_CP015385:1966091-1966193 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT62995 NZ_CP015385:c1966200-1966055 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
