Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1918392..1918537 | Replicon | chromosome |
| Accession | NZ_CP015382 | ||
| Organism | Klebsiella pneumoniae strain CN1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1918428..1918530 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1918392..1918537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6U99_RS09750 | 1913522..1915582 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A6U99_RS09760 | 1915586..1916245 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| A6U99_RS09765 | 1916324..1916554 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A6U99_RS09770 | 1916667..1917041 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A6U99_RS09775 | 1917045..1917914 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| A6U99_RS09780 | 1917931..1918269 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1918392..1918537 | - | 146 | - | - | Antitoxin |
| - | 1918428..1918530 | + | 103 | - | - | Toxin |
| A6U99_RS28870 | 1918905..1919048 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A6U99_RS09795 | 1919153..1920121 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| A6U99_RS09800 | 1920278..1920931 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| A6U99_RS09805 | 1920928..1921119 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A6U99_RS09810 | 1921217..1921456 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A6U99_RS09815 | 1921572..1923005 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62977 NZ_CP015382:1918428-1918530 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT62977 NZ_CP015382:c1918537-1918392 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
