Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3704588..3704706 | Replicon | chromosome |
| Accession | NZ_CP015379 | ||
| Organism | Hafnia alvei strain HUMV-5920 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3704590..3704693 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3704588..3704706 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6V27_RS21855 | 3700081..3700257 | - | 177 | WP_201247272.1 | hypothetical protein | - |
| A6V27_RS16750 | 3700266..3700784 | - | 519 | WP_063587113.1 | phage regulatory CII family protein | - |
| A6V27_RS16755 | 3700817..3701203 | - | 387 | WP_063587114.1 | hypothetical protein | - |
| A6V27_RS21815 | 3701316..3701993 | + | 678 | WP_161485315.1 | helix-turn-helix domain containing protein | - |
| A6V27_RS21725 | 3701966..3702469 | + | 504 | WP_161485316.1 | helix-turn-helix domain containing protein | - |
| A6V27_RS16765 | 3702453..3702887 | + | 435 | WP_063587115.1 | hypothetical protein | - |
| A6V27_RS16770 | 3702953..3703366 | + | 414 | WP_063587116.1 | hypothetical protein | - |
| A6V27_RS16775 | 3703465..3704520 | + | 1056 | WP_063587117.1 | tyrosine-type recombinase/integrase | - |
| - | 3704588..3704706 | + | 119 | - | - | Antitoxin |
| - | 3704590..3704693 | - | 104 | - | - | Toxin |
| A6V27_RS16780 | 3704981..3707611 | - | 2631 | WP_063587118.1 | PqiB family protein | - |
| A6V27_RS16785 | 3707580..3708824 | - | 1245 | WP_063587119.1 | membrane integrity lipid transport subunit YebS | - |
| A6V27_RS16790 | 3709055..3709546 | + | 492 | WP_043493284.1 | GAF domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3623082..3707611 | 84529 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62956 NZ_CP015379:c3704693-3704590 [Hafnia alvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTTTTTTT
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT62956 NZ_CP015379:3704588-3704706 [Hafnia alvei]
ATAAAAAAAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG
ATAAAAAAAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG
