Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/-
Location 1873498..1874151 Replicon chromosome
Accession NZ_CP015364
Organism Acinetobacter baumannii strain 3207

Toxin (Protein)


Gene name cptA Uniprot ID A0A427QZH0
Locus tag Aba3207_RS09155 Protein ID WP_000931891.1
Coordinates 1873498..1873887 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID V5V966
Locus tag Aba3207_RS09160 Protein ID WP_001288210.1
Coordinates 1873894..1874151 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Aba3207_RS09140 1868616..1870811 - 2196 WP_001158905.1 TRAP transporter large permease subunit -
Aba3207_RS09145 1870999..1871565 - 567 WP_000651536.1 rhombosortase -
Aba3207_RS09150 1871643..1872728 - 1086 WP_000049104.1 hypothetical protein -
Aba3207_RS09155 1873498..1873887 - 390 WP_000931891.1 hypothetical protein Toxin
Aba3207_RS09160 1873894..1874151 - 258 WP_001288210.1 succinate dehydrogenase assembly factor 2 Antitoxin
Aba3207_RS09165 1874339..1875511 + 1173 WP_001190558.1 acyl-CoA dehydrogenase family protein -
Aba3207_RS09170 1875561..1877051 - 1491 WP_000415132.1 NAD(P)/FAD-dependent oxidoreductase -
Aba3207_RS09175 1877233..1877610 - 378 WP_001216380.1 50S ribosomal protein L17 -
Aba3207_RS09180 1877629..1878636 - 1008 WP_000198631.1 DNA-directed RNA polymerase subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(10-82)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 15635.91 Da        Isoelectric Point: 10.3890

>T62906 WP_000931891.1 NZ_CP015364:c1873887-1873498 [Acinetobacter baumannii]
MLNHLNFKLKYSRFSIIFQFFIGLSLAILFYQLMPLLWWLVVISLLFISFIFFLKRPQLAQIAYLDKKLWSLAYHSQNTI
SRVKILKVIDYQIFIVIYFEGHKTLTSIIWFDQMSLAEWKKLKTLEKLY

Download         Length: 390 bp

>T62906 NZ_CP015364:c1873887-1873498 [Acinetobacter baumannii]
TTGCTCAACCATTTGAATTTTAAGCTGAAATATAGTCGTTTTTCGATTATATTTCAGTTTTTTATTGGCTTAAGCTTAGC
AATTCTATTTTATCAATTAATGCCGTTACTATGGTGGTTAGTTGTAATCAGCTTACTATTTATAAGCTTTATTTTCTTTT
TAAAGCGTCCGCAGCTTGCGCAAATTGCTTATTTAGATAAAAAACTATGGTCGCTTGCTTATCACTCACAGAACACCATT
TCTCGCGTCAAAATTTTAAAAGTAATTGATTATCAGATTTTCATAGTGATCTATTTTGAAGGTCATAAAACACTAACTTC
TATCATTTGGTTTGATCAAATGTCATTAGCAGAGTGGAAAAAGCTTAAAACTTTAGAAAAACTCTATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10318.77 Da        Isoelectric Point: 4.6150

>AT62906 WP_001288210.1 NZ_CP015364:c1874151-1873894 [Acinetobacter baumannii]
MSEEMTLEERKVIYRARRGLKEIDVYFDPYVKNYYLKADPAEKALFAELVEQEDPDLLDWFMEVSEPPRTELRDFIYKLK
HYVHG

Download         Length: 258 bp

>AT62906 NZ_CP015364:c1874151-1873894 [Acinetobacter baumannii]
ATGTCTGAAGAAATGACCTTGGAAGAACGTAAAGTAATCTATCGCGCACGTCGTGGTTTAAAGGAAATTGATGTCTATTT
TGACCCTTATGTGAAAAATTATTATTTAAAGGCAGACCCGGCAGAAAAAGCGTTGTTTGCTGAGTTGGTAGAACAGGAAG
ATCCTGATTTACTCGATTGGTTTATGGAAGTATCAGAACCACCACGTACCGAATTACGTGACTTTATCTATAAATTAAAA
CACTATGTTCATGGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A427QZH0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BQM7

References