62824

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relB/YoeB-YefM
Location 1959405..1959904 Replicon chromosome
Accession NZ_CP015278
Organism Mycobacterium intracellulare subsp. chimaera strain DSM 44623

Toxin (Protein)


Gene name yoeB Uniprot ID A0A1Y0T0F0
Locus tag MYCODSM44623_RS09465 Protein ID WP_042911194.1
Coordinates 1959405..1959662 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A1Y0T5M8
Locus tag MYCODSM44623_RS09470 Protein ID WP_042911195.1
Coordinates 1959659..1959904 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MYCODSM44623_RS09455 1954950..1957304 + 2355 WP_042911192.1 glycerol-3-phosphate 1-O-acyltransferase -
MYCODSM44623_RS09460 1957333..1959408 + 2076 WP_042911193.1 cytochrome c oxidase assembly protein -
MYCODSM44623_RS09465 1959405..1959662 - 258 WP_042911194.1 Txe/YoeB family addiction module toxin Toxin
MYCODSM44623_RS09470 1959659..1959904 - 246 WP_042911195.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
MYCODSM44623_RS09475 1960112..1960582 + 471 WP_008255143.1 single-stranded DNA-binding protein -
MYCODSM44623_RS09480 1960660..1962336 + 1677 WP_009955480.1 energy-dependent translational throttle protein EttA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-70)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9873.43 Da        Isoelectric Point: 9.9087

>T62824 WP_042911194.1 NZ_CP015278:c1959662-1959405 [Mycobacterium intracellulare subsp. chimaera]
MNIVFAPQAWDDYLHWQTADRAVLKRINKLIAEACRSPQAGIGKPEPLKYGLVGAWSRRITQEHRLVYRVVGDDLQILQA
RFHYI

Download         Length: 258 bp

>T62824 NZ_CP015278:c1959662-1959405 [Mycobacterium intracellulare subsp. chimaera]
ATGAACATCGTCTTCGCGCCTCAAGCGTGGGACGACTACCTGCACTGGCAGACGGCCGACCGGGCCGTGCTCAAGCGGAT
CAACAAGCTCATCGCGGAGGCTTGCCGGTCGCCGCAGGCGGGCATCGGCAAGCCTGAGCCCCTGAAATACGGGCTCGTCG
GCGCCTGGTCCCGGCGAATTACCCAGGAACACCGGCTCGTCTATCGGGTCGTCGGCGATGACCTGCAGATCCTCCAGGCC
CGGTTTCACTACATCTAG

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8947.01 Da        Isoelectric Point: 4.5742

>AT62824 WP_042911195.1 NZ_CP015278:c1959904-1959659 [Mycobacterium intracellulare subsp. chimaera]
VAITASEARKNLFPLIEKVNADRTSIEITSKAGRAVLMSADDWEAWQETAYLFQSPANARRLLDAADALDRGRGIRADLD
E

Download         Length: 246 bp

>AT62824 NZ_CP015278:c1959904-1959659 [Mycobacterium intracellulare subsp. chimaera]
GTGGCCATCACGGCGAGCGAGGCGCGCAAGAACCTGTTTCCCCTGATCGAGAAGGTGAACGCCGACCGGACGTCGATCGA
GATCACGTCGAAAGCTGGTCGCGCGGTGCTGATGTCCGCCGATGACTGGGAGGCGTGGCAGGAGACGGCATACCTGTTCC
AGTCCCCGGCGAACGCCCGCCGGCTCCTCGACGCCGCTGACGCCCTGGACAGGGGCCGCGGAATCCGGGCCGACCTCGAC
GAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1Y0T0F0

Antitoxin

Source ID Structure
AlphaFold DB A0A1Y0T5M8

References