Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | Rv0298-Rv0299/- |
Location | 727649..728178 | Replicon | chromosome |
Accession | NZ_CP015267 | ||
Organism | Mycobacterium intracellulare subsp. chimaera strain ZUERICH-2 |
Toxin (Protein)
Gene name | Rv0299 | Uniprot ID | X7VD93 |
Locus tag | MYCOZU2_RS03715 | Protein ID | WP_007172144.1 |
Coordinates | 727649..727954 (-) | Length | 102 a.a. |
Antitoxin (Protein)
Gene name | Rv0298 | Uniprot ID | A0A1X1WNE2 |
Locus tag | MYCOZU2_RS03720 | Protein ID | WP_042910679.1 |
Coordinates | 727951..728178 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MYCOZU2_RS31135 | 722727..722867 | + | 141 | WP_007172137.1 | hypothetical protein | - |
MYCOZU2_RS03690 | 722864..723250 | + | 387 | WP_007172138.1 | YbaB/EbfC family nucleoid-associated protein | - |
MYCOZU2_RS03695 | 723320..723997 | + | 678 | WP_101930854.1 | hypothetical protein | - |
MYCOZU2_RS03700 | 723997..724329 | + | 333 | WP_033717256.1 | hypothetical protein | - |
MYCOZU2_RS03705 | 724617..724904 | + | 288 | WP_007172141.1 | hypothetical protein | - |
MYCOZU2_RS30515 | 726342..727277 | + | 936 | WP_109413176.1 | hypothetical protein | - |
MYCOZU2_RS03715 | 727649..727954 | - | 306 | WP_007172144.1 | hypothetical protein | Toxin |
MYCOZU2_RS03720 | 727951..728178 | - | 228 | WP_042910679.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
MYCOZU2_RS03730 | 728664..730154 | + | 1491 | WP_007172147.1 | type VII secretion protein EccB | - |
MYCOZU2_RS03735 | 730228..731283 | + | 1056 | WP_007172148.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 10428.23 Da Isoelectric Point: 3.9382
>T62790 WP_007172144.1 NZ_CP015267:c727954-727649 [Mycobacterium intracellulare subsp. chimaera]
VITPGDITPGRDTNQELYVVVLSNTIHLAAATGQVIICPFIPGEIPSSTMAMIVTVLQPKGVVLPELIQWLPVAALDQPI
GNIGGIALADTTTTAVTALIS
VITPGDITPGRDTNQELYVVVLSNTIHLAAATGQVIICPFIPGEIPSSTMAMIVTVLQPKGVVLPELIQWLPVAALDQPI
GNIGGIALADTTTTAVTALIS
Download Length: 306 bp
>T62790 NZ_CP015267:c727954-727649 [Mycobacterium intracellulare subsp. chimaera]
GTGATCACACCCGGAGACATCACGCCAGGCCGCGACACCAACCAGGAACTGTACGTTGTCGTACTATCTAACACGATTCA
CCTCGCAGCCGCCACCGGCCAGGTGATCATCTGCCCCTTCATTCCCGGTGAAATCCCCAGCAGCACAATGGCTATGATCG
TCACAGTGCTGCAACCCAAAGGGGTTGTCTTACCGGAGCTCATCCAGTGGCTTCCTGTCGCGGCCCTCGACCAACCCATC
GGCAATATCGGCGGCATCGCGCTCGCTGACACGACCACGACCGCCGTCACCGCGCTCATTTCCTGA
GTGATCACACCCGGAGACATCACGCCAGGCCGCGACACCAACCAGGAACTGTACGTTGTCGTACTATCTAACACGATTCA
CCTCGCAGCCGCCACCGGCCAGGTGATCATCTGCCCCTTCATTCCCGGTGAAATCCCCAGCAGCACAATGGCTATGATCG
TCACAGTGCTGCAACCCAAAGGGGTTGTCTTACCGGAGCTCATCCAGTGGCTTCCTGTCGCGGCCCTCGACCAACCCATC
GGCAATATCGGCGGCATCGCGCTCGCTGACACGACCACGACCGCCGTCACCGCGCTCATTTCCTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8167.24 Da Isoelectric Point: 5.0079
>AT62790 WP_042910679.1 NZ_CP015267:c728178-727951 [Mycobacterium intracellulare subsp. chimaera]
MAKAKVSVMIEEAVLAAADADAQAAGLNRSEMIERALHNEHLRISLENYTTHTVPTLDIDAYAEKIYQANRAAGL
MAKAKVSVMIEEAVLAAADADAQAAGLNRSEMIERALHNEHLRISLENYTTHTVPTLDIDAYAEKIYQANRAAGL
Download Length: 228 bp
>AT62790 NZ_CP015267:c728178-727951 [Mycobacterium intracellulare subsp. chimaera]
ATGGCGAAAGCCAAAGTGTCCGTAATGATTGAAGAGGCCGTGCTGGCGGCGGCCGATGCGGACGCCCAGGCGGCCGGGCT
GAATCGTTCAGAGATGATCGAACGAGCCCTGCACAACGAGCATCTCCGAATCTCGCTCGAGAACTACACAACACACACTG
TGCCAACGCTCGACATCGACGCCTACGCGGAGAAGATCTATCAGGCGAACCGGGCCGCTGGCCTGTGA
ATGGCGAAAGCCAAAGTGTCCGTAATGATTGAAGAGGCCGTGCTGGCGGCGGCCGATGCGGACGCCCAGGCGGCCGGGCT
GAATCGTTCAGAGATGATCGAACGAGCCCTGCACAACGAGCATCTCCGAATCTCGCTCGAGAACTACACAACACACACTG
TGCCAACGCTCGACATCGACGCCTACGCGGAGAAGATCTATCAGGCGAACCGGGCCGCTGGCCTGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1X1XDZ0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1X1WNE2 |