Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2060000..2060271 | Replicon | chromosome |
| Accession | NZ_CP015244 | ||
| Organism | Escherichia coli O91 str. RM7190 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2060038..2060141 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2060000..2060271 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I51_RS10780 | 2057157..2058596 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I51_RS10785 | 2058714..2058950 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I51_RS10790 | 2059055..2059246 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I51_RS10795 | 2059247..2059903 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2060000..2060271 | + | 272 | - | - | Antitoxin |
| - | 2060038..2060141 | - | 104 | - | - | Toxin |
| I51_RS10800 | 2060299..2060640 | - | 342 | WP_000976492.1 | YebY family protein | - |
| I51_RS10805 | 2060653..2061525 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| I51_RS10810 | 2061529..2061903 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| I51_RS10815 | 2062042..2062272 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I51_RS10820 | 2062374..2063030 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I51_RS10825 | 2063054..2063716 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62766 NZ_CP015244:c2060141-2060038 [Escherichia coli O91 str. RM7190]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT62766 NZ_CP015244:2060000-2060271 [Escherichia coli O91 str. RM7190]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
