Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4715860..4716131 | Replicon | chromosome |
| Accession | NZ_CP015240 | ||
| Organism | Escherichia coli strain 2011C-3911 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4715898..4716001 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4715860..4716131 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5956_RS23845 | 4713017..4714456 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A5956_RS23850 | 4714574..4714810 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A5956_RS23855 | 4714915..4715106 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A5956_RS23860 | 4715107..4715763 | - | 657 | Protein_4399 | protein-serine/threonine phosphatase | - |
| - | 4715860..4716131 | + | 272 | - | - | Antitoxin |
| - | 4715898..4716001 | - | 104 | - | - | Toxin |
| A5956_RS23870 | 4716159..4716500 | - | 342 | WP_000976492.1 | YebY family protein | - |
| A5956_RS23875 | 4716513..4717385 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| A5956_RS23880 | 4717389..4717763 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A5956_RS23885 | 4717902..4718132 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A5956_RS23890 | 4718234..4718890 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| A5956_RS23895 | 4718914..4719576 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62723 NZ_CP015240:c4716001-4715898 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT62723 NZ_CP015240:4715860-4716131 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
