Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2464724..2464995 | Replicon | chromosome |
| Accession | NZ_CP015229 | ||
| Organism | Escherichia coli strain 06-00048 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2464762..2464865 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2464724..2464995 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ11_RS14295 | 2461882..2463321 | + | 1440 | WP_065228237.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GJ11_RS14300 | 2463439..2463675 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GJ11_RS14305 | 2463780..2463971 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GJ11_RS14310 | 2463972..2464628 | - | 657 | WP_065227080.1 | protein-serine/threonine phosphatase | - |
| - | 2464724..2464995 | + | 272 | - | - | Antitoxin |
| - | 2464762..2464865 | - | 104 | - | - | Toxin |
| GJ11_RS14315 | 2465023..2465364 | - | 342 | WP_000976474.1 | YebY family protein | - |
| GJ11_RS14320 | 2465377..2466249 | - | 873 | WP_065227081.1 | copper homeostasis membrane protein CopD | - |
| GJ11_RS14325 | 2466253..2466627 | - | 375 | WP_065227082.1 | CopC domain-containing protein YobA | - |
| GJ11_RS14330 | 2466766..2466996 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GJ11_RS14335 | 2467098..2467754 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| GJ11_RS14340 | 2467778..2468440 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62685 NZ_CP015229:c2464865-2464762 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT62685 NZ_CP015229:2464724-2464995 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
