Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2287633..2287904 | Replicon | chromosome |
| Accession | NZ_CP015228 | ||
| Organism | Escherichia coli strain 09-00049 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2287671..2287774 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2287633..2287904 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ12_RS12970 | 2284790..2286229 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GJ12_RS12975 | 2286347..2286583 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GJ12_RS12980 | 2286688..2286879 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GJ12_RS12985 | 2286880..2287536 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2287633..2287904 | + | 272 | - | - | Antitoxin |
| - | 2287671..2287774 | - | 104 | - | - | Toxin |
| GJ12_RS12995 | 2287932..2288273 | - | 342 | WP_000976492.1 | YebY family protein | - |
| GJ12_RS13000 | 2288286..2289158 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| GJ12_RS13005 | 2289162..2289536 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GJ12_RS13010 | 2289675..2289905 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GJ12_RS13015 | 2290007..2290663 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| GJ12_RS13020 | 2290687..2291349 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62654 NZ_CP015228:c2287774-2287671 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT62654 NZ_CP015228:2287633-2287904 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
