Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3773942..3774096 | Replicon | chromosome |
| Accession | NZ_CP015227 | ||
| Organism | Enterobacter sp. ODB01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3773958..3774061 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3773942..3774096 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4308_RS17870 | 3770219..3771661 | + | 1443 | WP_045281183.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A4308_RS17875 | 3771767..3772006 | + | 240 | WP_008500472.1 | YebV family protein | - |
| A4308_RS17880 | 3772041..3772685 | - | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| A4308_RS17885 | 3772853..3773794 | + | 942 | WP_045281182.1 | VirK/YbjX family protein | - |
| - | 3773942..3774096 | + | 155 | - | - | Antitoxin |
| - | 3773958..3774061 | - | 104 | - | - | Toxin |
| A4308_RS17890 | 3774201..3774539 | - | 339 | WP_014884299.1 | YebY family protein | - |
| A4308_RS17895 | 3774556..3775425 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| A4308_RS17900 | 3775427..3775798 | - | 372 | WP_045281181.1 | CopC domain-containing protein YobA | - |
| A4308_RS17905 | 3775936..3776166 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| A4308_RS17910 | 3776277..3776927 | + | 651 | WP_045281180.1 | carbon-nitrogen hydrolase family protein | - |
| A4308_RS17915 | 3776952..3777614 | + | 663 | WP_045281179.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62640 NZ_CP015227:c3774061-3773958 [Enterobacter sp. ODB01]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT62640 NZ_CP015227:3773942-3774096 [Enterobacter sp. ODB01]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
