62605

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 2061452..2062121 Replicon chromosome
Accession NZ_CP015194
Organism Shewanella sp. Pdp11

Toxin (Protein)


Gene name ygfX Uniprot ID -
Locus tag AYJ58_RS09080 Protein ID WP_106649850.1
Coordinates 2061681..2062121 (+) Length 147 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID -
Locus tag AYJ58_RS09075 Protein ID WP_106649849.1
Coordinates 2061452..2061700 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYJ58_RS09050 2057109..2057918 + 810 WP_106649844.1 prolipoprotein diacylglyceryl transferase -
AYJ58_RS09055 2057915..2058709 + 795 WP_106649845.1 thymidylate synthase -
AYJ58_RS09060 2058827..2059996 + 1170 WP_106649846.1 Na+/H+ antiporter NhaA -
AYJ58_RS09065 2059999..2060385 + 387 WP_106649847.1 hypothetical protein -
AYJ58_RS09070 2060458..2061366 + 909 WP_106649848.1 transcriptional activator NhaR -
AYJ58_RS09075 2061452..2061700 + 249 WP_106649849.1 succinate dehydrogenase assembly factor 2 Antitoxin
AYJ58_RS09080 2061681..2062121 + 441 WP_106649850.1 hypothetical protein Toxin
AYJ58_RS09085 2062173..2063786 - 1614 WP_106649851.1 L-aspartate oxidase -
AYJ58_RS09090 2063976..2064554 + 579 WP_106649852.1 RNA polymerase sigma factor RpoE -
AYJ58_RS09095 2064596..2065222 + 627 WP_106649853.1 anti-sigma factor -
AYJ58_RS09100 2065235..2066167 + 933 WP_106649854.1 MucB/RseB C-terminal domain-containing protein -
AYJ58_RS09105 2066178..2066651 + 474 WP_106649855.1 SoxR reducing system RseC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(6-135)

Antitoxin

Flavinator of succinate dehydrogenase

(7-77)


Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 17256.28 Da        Isoelectric Point: 8.3629

>T62605 WP_106649850.1 NZ_CP015194:2061681-2062121 [Shewanella sp. Pdp11]
VEDRHHSFSVKASFDQRLSLVVFICVCSSSFLFWPQSDNFALSLLKYLFIALVCIFLLSQLWRLQQWRLDFVLSDKGEGR
LSTGEHFQVLKRTWVTPFVCLMYIEVGTQLRLLMVWADMLDDTDYRHLCRLLLRAKIKQTKPHNEV

Download         Length: 441 bp

>T62605 NZ_CP015194:2061681-2062121 [Shewanella sp. Pdp11]
GTGGAAGACCGGCACCATAGTTTCAGTGTAAAAGCCTCCTTCGACCAGCGACTCTCGTTGGTCGTTTTTATTTGTGTCTG
TTCTAGCTCATTTTTGTTCTGGCCTCAAAGTGATAATTTCGCCTTATCCCTGCTTAAATATCTGTTTATCGCGCTGGTTT
GTATCTTCTTGCTGTCGCAGTTGTGGCGACTGCAGCAGTGGCGTTTAGATTTTGTGCTGAGTGATAAAGGTGAGGGACGT
TTATCAACGGGGGAGCACTTTCAGGTATTAAAGCGCACTTGGGTGACACCCTTTGTATGTTTGATGTATATCGAAGTGGG
TACTCAGCTGCGGCTCTTGATGGTTTGGGCGGATATGTTAGACGATACTGACTATCGGCATTTATGTCGGCTGTTACTGC
GGGCTAAAATAAAACAGACTAAACCTCATAACGAGGTTTAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9767.41 Da        Isoelectric Point: 4.4929

>AT62605 WP_106649849.1 NZ_CP015194:2061452-2061700 [Shewanella sp. Pdp11]
MELMNIARVRWACRRGMLELDVLFQPFVENFYQEMSDEDKTVFIRLLECEDPELFAWFMGHEVCPDTELARMIVKVRGRP
AP

Download         Length: 249 bp

>AT62605 NZ_CP015194:2061452-2061700 [Shewanella sp. Pdp11]
TTGGAATTAATGAACATCGCAAGGGTTCGCTGGGCATGTCGCCGCGGGATGCTGGAATTAGACGTTTTGTTTCAACCTTT
TGTTGAAAACTTCTATCAAGAAATGTCTGATGAAGATAAAACCGTGTTTATCCGTTTGTTAGAATGTGAAGATCCTGAAT
TGTTTGCTTGGTTTATGGGCCATGAAGTGTGTCCTGACACTGAACTGGCTCGTATGATAGTAAAAGTCCGTGGAAGACCG
GCACCATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References